Tools


As we are working with cutting-edge technology, we need to develop our own bioinformatics tools to deal with experimental design, data analysis, and modeling. Programs will be added here as they become available. Please do not hesitate to contact us concerning any problems using the software.

3CPrimer

This program will generate 3C primers for any specified genomic region. It also makes use of the RepeatMasker program which enables the easy identification of potentially problematic primers.

5CPrimer

This program will generate 5C primers for any specified genomic region. It also makes use of the RepeatMasker program which enables the easy identification of potentially problematic primers.

5C Program Collection

This is the collection of programs used by Fraser et al., 2009.

MCMC5C Code

The code for Rousseau et al., 2011